Changelog

All notable changes to this project will be documented in this file.

The format is based on Keep a Changelog, and this project adheres to Semantic Versioning.

[Unreleased]

Added

• spatialrefinery.core: a technology/converter registry (registry), shared spatial-omics helpers (utils), an image-to-pyramidal-OME-TIFF converter (converter, with an optional czi extra for Zeiss CZI via bioio), and a retrying, atomic-write asset downloader (downloader).

• spatialrefinery.io.xenium: convert 10x Genomics Xenium bundles to SpatialData zarr stores, optionally with aligned H&E images, tissue segmentation, and Visium-like pseudo-spots; download a Xenium study’s raw assets from a curl -O <url> manifest.